Afternoon Practicals (Labs)

Analyzing flow cytometry data in Bioconductor

Bioconductor for microarray quality assessment

Efficient string manipulation and genome-wide motif searching with Biostrings and the BSgenome data packages

Using the Databases within: a closer look at the new Annotation Packages

X:Map and exonmap tools for exon level annotation and exploration of Affymetrix exon array data

Getting Started with Lattice Graphics

Pairwise Sequence Alignments using Biostrings

Machine learning with Bioconductor: MLInterfaces

Gene Set Enrichment Analysis with R

rtracklayer: an R interface to existing genome browsers

ShortRead: tools for input and quality assessment of high-throughput sequence data

Fitting linear models to one-color arrays using limma

Presenting the results of an analysis - annotating data and creating useful output for one-color arrays