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Advanced R / Bioconductor Workshop on High-Throughput Genetic Analysis

Seattle, USA

2012-02-27 ~ 2012-02-28

Instructors

  • Martin Morgan
  • Hervé Pagès
  • Marc Carlson
  • Valerie Obenchain
  • Vince Carey
  • Aedin Culhane
  • Sean Davis
  • Thomas Girke
  • Michael Lawrence
  • Steve Lianoglou

Description

The Advanced R / Bioconductor Workshop on High-Throughput Genetic Analysis is a unique combination of expert practitioners and advanced students working together to explore statistical and bioinformatic issues in analysis of high throughput genomic data.

Materials

Data Structures and Packages for Reproducible High-throughput Analysis

1. Introduction

Slides

2. A Generalized Interface for Annotations

Slides

3. High-level S4 Containers for HTS Data

Slides Solutions to exercises

4. Annotation of Genetic Variants

Slides Exercises

ChIP-Seq Analysis with R and Bioconductor

Slides R Code Data Sets

Isoform-specific RNA-seq

Slides R Code Package

Run the following R code to install the dependencies for this package:

source("http://www.tengfei.name/projects/ggbio/utils/installer.R")

Genetics of Expression and the Implementation of Very High Throughput Statistical Test Procedures

Slides

Accomplishing Exome Sequencing Data Tasks with Bioconductor

Slides Website

Machine Learning for Next-Generation Sequence Analysis

Slides

Biclustering and Analysis of Large Gene Sets

Slides