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AffyRNADegradation

This is the development version of AffyRNADegradation; for the stable release version, see AffyRNADegradation.

Analyze and correct probe positional bias in microarray data due to RNA degradation

Bioconductor version: Development (3.18)

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Citation (from within R, enter citation("AffyRNADegradation")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AffyRNADegradation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version 1.47.0
In Bioconductor since BioC 2.10 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 2.9.0), methods, affy
Imports
Linking To
Suggests AmpAffyExample
System Requirements
Enhances
URL
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary AffyRNADegradation_1.47.0.zip
macOS Binary (x86_64) AffyRNADegradation_1.47.0.tgz
macOS Binary (arm64) AffyRNADegradation_1.47.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffyRNADegradation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AffyRNADegradation
Bioc Package Browser https://code.bioconductor.org/browse/AffyRNADegradation/
Package Short Url https://bioconductor.org/packages/AffyRNADegradation/
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