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AnVILWorkflow

This is the development version of AnVILWorkflow; for the stable release version, see AnVILWorkflow.

Run workflows implemented in Terra/AnVIL workspace

Bioconductor version: Development (3.18)

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Author: Sehyun Oh [aut, cre]

Maintainer: Sehyun Oh <shbrief at gmail.com>

Citation (from within R, enter citation("AnVILWorkflow")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILWorkflow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILWorkflow")
Quickstart: RNAseq analysis using salmon HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.1.3
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports utils, AnVIL, httr, methods, jsonlite
Linking To
Suggests knitr, tibble, BiocStyle
System Requirements
Enhances
URL
Bug Reports https://github.com/shbrief/AnVILWorkflow/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILWorkflow_1.1.3.tar.gz
Windows Binary AnVILWorkflow_1.1.3.zip
macOS Binary (x86_64) AnVILWorkflow_1.1.3.tgz
macOS Binary (arm64) AnVILWorkflow_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnVILWorkflow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILWorkflow
Bioc Package Browser https://code.bioconductor.org/browse/AnVILWorkflow/
Package Short Url https://bioconductor.org/packages/AnVILWorkflow/
Package Downloads Report Download Stats