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BCRANK

This is the development version of BCRANK; for the stable release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Development (3.18)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BCRANK")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")
BCRANK PDF R Script
Reference Manual PDF

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.63.0
In Bioconductor since BioC 2.2 (R-2.7) (15.5 years)
License GPL-2
Depends methods
Imports Biostrings
Linking To
Suggests seqLogo
System Requirements
Enhances
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Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BCRANK_1.63.0.tar.gz
Windows Binary BCRANK_1.63.0.zip
macOS Binary (x86_64) BCRANK_1.63.0.tgz
macOS Binary (arm64) BCRANK_1.63.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BCRANK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BCRANK
Bioc Package Browser https://code.bioconductor.org/browse/BCRANK/
Package Short Url https://bioconductor.org/packages/BCRANK/
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