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BaseSpaceR

This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: Development (3.18)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")
BaseSpaceR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.45.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
Linking To
Suggests RUnit, IRanges, Rsamtools
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.45.0.tar.gz
Windows Binary BaseSpaceR_1.45.0.zip (64-bit only)
macOS Binary (x86_64) BaseSpaceR_1.45.0.tgz
macOS Binary (arm64) BaseSpaceR_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BaseSpaceR
Bioc Package Browser https://code.bioconductor.org/browse/BaseSpaceR/
Package Short Url https://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report Download Stats