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BioTIP

This is the development version of BioTIP; for the stable release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Development (3.18)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Yuxi (Jennifer) Sun <ysun11 at uchicago.edu>, Zhezhen Wang <zhezhen at uchicago.edu>, and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.15.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL-2
Depends R (>= 3.6)
Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran
Linking To
Suggests knitr, markdown, base, rmarkdown, ggplot2
System Requirements
Enhances
URL https://github.com/xyang2uchicago/BioTIP
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary BioTIP_1.15.0.zip
macOS Binary (x86_64) BioTIP_1.15.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioTIP
Bioc Package Browser https://code.bioconductor.org/browse/BioTIP/
Package Short Url https://bioconductor.org/packages/BioTIP/
Package Downloads Report Download Stats