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BiocHubsShiny

This is the development version of BiocHubsShiny; for the stable release version, see BiocHubsShiny.

View AnnotationHub and ExperimentHub Resources Interactively

Bioconductor version: Development (3.18)

A package that allows interactive exploration of AnnotationHub and ExperimentHub resources. It uses DT / DataTable to display resources for multiple organisms. It provides template code for reproducibility and for downloading resources via the indicated Hub package.

Author: Marcel Ramos [aut, cre] , Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("BiocHubsShiny")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocHubsShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHubsShiny")
BiocHubsShiny Overview HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ShinyApps, Software
Version 1.1.1
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0), shiny
Imports AnnotationHub, ExperimentHub, DT, htmlwidgets, S4Vectors, shinyAce, shinyjs, shinythemes, shinytoastr, utils
Linking To
Suggests BiocManager, BiocStyle, knitr, rmarkdown, sessioninfo, shinytest2
System Requirements
Enhances
URL https://github.com/Bioconductor/BiocHubsShiny
Bug Reports https://github.com/Bioconductor/BiocHubsShiny/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHubsShiny_1.1.1.tar.gz
Windows Binary BiocHubsShiny_1.1.1.zip
macOS Binary (x86_64) BiocHubsShiny_1.1.1.tgz
macOS Binary (arm64) BiocHubsShiny_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocHubsShiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHubsShiny
Bioc Package Browser https://code.bioconductor.org/browse/BiocHubsShiny/
Package Short Url https://bioconductor.org/packages/BiocHubsShiny/
Package Downloads Report Download Stats