This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

BiocWorkflowTools

This is the development version of BiocWorkflowTools; for the stable release version, see BiocWorkflowTools.

Tools to aid the development of Bioconductor Workflow packages

Bioconductor version: Development (3.18)

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej Oleś [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("BiocWorkflowTools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")
Converting Rmarkdown to F1000Research LaTeX Format HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ReportWriting, Software
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me RNAseq123
Imports Me
Suggests Me BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocWorkflowTools_1.27.0.tar.gz
Windows Binary BiocWorkflowTools_1.27.0.zip
macOS Binary (x86_64) BiocWorkflowTools_1.27.0.tgz
macOS Binary (arm64) BiocWorkflowTools_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocWorkflowTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocWorkflowTools
Bioc Package Browser https://code.bioconductor.org/browse/BiocWorkflowTools/
Package Short Url https://bioconductor.org/packages/BiocWorkflowTools/
Package Downloads Report Download Stats