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CNORode

This is the development version of CNORode; for the stable release version, see CNORode.

ODE add-on to CellNOptR

Bioconductor version: Development (3.18)

Logic based ordinary differential equation (ODE) add-on to CellNOptR.

Author: David Henriques, Thomas Cokelaer, Attila Gabor, Federica Eduati, Enio Gjerga

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

Citation (from within R, enter citation("CNORode")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNORode")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORode")
Training Signalling Pathway Maps to Biochemical Data with Logic-Based Ordinary Differential Equations PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Bioinformatics, CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse
Version 1.43.0
In Bioconductor since BioC 2.11 (R-2.15) (11 years)
License GPL-2
Depends CellNOptR, genalg, knitr
Imports
Linking To
Suggests
System Requirements
Enhances MEIGOR, doParallel, foreach
URL
See More
Depends On Me MEIGOR
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORode_1.43.0.tar.gz
Windows Binary CNORode_1.43.0.zip
macOS Binary (x86_64) CNORode_1.43.0.tgz
macOS Binary (arm64) CNORode_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNORode
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORode
Bioc Package Browser https://code.bioconductor.org/browse/CNORode/
Package Short Url https://bioconductor.org/packages/CNORode/
Package Downloads Report Download Stats