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CNTools

This is the development version of CNTools; for the stable release version, see CNTools.

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Development (3.18)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")
NCTools HowTo PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.57.0
In Bioconductor since BioC 2.5 (R-2.10) (14 years)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
Imports
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Depends On Me cghMCR
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNTools_1.57.0.tar.gz
Windows Binary CNTools_1.57.0.zip (64-bit only)
macOS Binary (x86_64) CNTools_1.57.0.tgz
macOS Binary (arm64) CNTools_1.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNTools
Bioc Package Browser https://code.bioconductor.org/browse/CNTools/
Package Short Url https://bioconductor.org/packages/CNTools/
Package Downloads Report Download Stats