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Clonality

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of Clonality; for the stable release version, see Clonality.

Clonality testing

Bioconductor version: Development (3.18)

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Clonality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Classification, CopyNumber, Diagnosis, Mutations, Software, aCGH, metastasis
Version 1.49.1
In Bioconductor since BioC 2.8 (R-2.13) (12.5 years)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports grDevices, graphics, stats, utils
Linking To
Suggests gdata
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Clonality
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Clonality
Package Short Url https://bioconductor.org/packages/Clonality/
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