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ClusterJudge

This is the development version of ClusterJudge; for the stable release version, see ClusterJudge.

Judging Quality of Clustering Methods using Mutual Information

Bioconductor version: Development (3.18)

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Author: Adrian Pasculescu

Maintainer: Adrian Pasculescu <a.pasculescu at gmail.com>

Citation (from within R, enter citation("ClusterJudge")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ClusterJudge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClusterJudge")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GO, GeneExpression, Software, StatisticalMethod
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 3.6), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite
Imports
Linking To
Suggests yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ClusterJudge_1.23.0.tar.gz
Windows Binary ClusterJudge_1.23.0.zip
macOS Binary (x86_64) ClusterJudge_1.23.0.tgz
macOS Binary (arm64) ClusterJudge_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ClusterJudge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ClusterJudge
Bioc Package Browser https://code.bioconductor.org/browse/ClusterJudge/
Package Short Url https://bioconductor.org/packages/ClusterJudge/
Package Downloads Report Download Stats