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ComPrAn

This is the development version of ComPrAn; for the stable release version, see ComPrAn.

Complexome Profiling Analysis package

Bioconductor version: Development (3.18)

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Author: Rick Scavetta [aut], Petra Palenikova [aut, cre]

Maintainer: Petra Palenikova <palenikova3 at gmail.com>

Citation (from within R, enter citation("ComPrAn")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ComPrAn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComPrAn")
fileFormats.html HTML R Script
Protein workflow HTML R Script
SILAC complexomics HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews MassSpectrometry, Proteomics, Software, Visualization
Version 1.9.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License MIT + file LICENSE
Depends
Imports data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid
Linking To
Suggests testthat (>= 2.1.0), knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComPrAn_1.9.0.tar.gz
Windows Binary ComPrAn_1.9.0.zip
macOS Binary (x86_64) ComPrAn_1.9.0.tgz
macOS Binary (arm64) ComPrAn_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComPrAn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComPrAn
Bioc Package Browser https://code.bioconductor.org/browse/ComPrAn/
Package Short Url https://bioconductor.org/packages/ComPrAn/
Package Downloads Report Download Stats