DEGseq

This is the development version of DEGseq; for the stable release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: Development (3.18)

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Citation (from within R, enter citation("DEGseq")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")

DEGseq	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version	1.55.0
In Bioconductor since	BioC 2.5 (R-2.10) (14 years)
License	LGPL (>=2)
Depends	R (>= 2.8.0), qvalue, methods
Imports	graphics, grDevices, methods, stats, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEGseq_1.55.0.tar.gz
Windows Binary	DEGseq_1.55.0.zip
macOS Binary (x86_64)	DEGseq_1.55.0.tgz
macOS Binary (arm64)	DEGseq_1.55.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEGseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEGseq
Bioc Package Browser	https://code.bioconductor.org/browse/DEGseq/
Package Short Url	https://bioconductor.org/packages/DEGseq/
Package Downloads Report	Download Stats