EBSEA

This is the development version of EBSEA; for the stable release version, see EBSEA.

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: Development (3.18)

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")

EBSEA	HTML	R Script
Reference Manual	PDF

Details

biocViews	DifferentialExpression, GeneExpression, Sequencing, Software
Version	1.29.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	GPL-2
Depends	R (>= 4.0.0)
Imports	DESeq2, graphics, stats, EmpiricalBrownsMethod
Linking To
Suggests	knitr, rmarkdown
System Requirements
Enhances
URL

Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EBSEA_1.29.0.tar.gz
Windows Binary	EBSEA_1.29.0.zip
macOS Binary (x86_64)	EBSEA_1.29.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSEA
Bioc Package Browser	https://code.bioconductor.org/browse/EBSEA/
Package Short Url	https://bioconductor.org/packages/EBSEA/
Package Downloads Report	Download Stats