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ExploreModelMatrix

This is the development version of ExploreModelMatrix; for the stable release version, see ExploreModelMatrix.

Graphical Exploration of Design Matrices

Bioconductor version: Development (3.18)

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Author: Charlotte Soneson [aut, cre] , Federico Marini [aut] , Michael Love [aut] , Florian Geier [aut] , Michael Stadler [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("ExploreModelMatrix")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExploreModelMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExploreModelMatrix")
ExploreModelMatrix HTML R Script
ExploreModelMatrix-deploy HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, ExperimentalDesign, Regression, ShinyApps, Software
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License MIT + file LICENSE
Depends
Imports shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors, shinyjs
Linking To
Suggests testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
System Requirements
Enhances
URL https://github.com/csoneson/ExploreModelMatrix
Bug Reports https://github.com/csoneson/ExploreModelMatrix/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExploreModelMatrix_1.13.0.tar.gz
Windows Binary ExploreModelMatrix_1.13.0.zip
macOS Binary (x86_64) ExploreModelMatrix_1.13.0.tgz
macOS Binary (arm64) ExploreModelMatrix_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExploreModelMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExploreModelMatrix
Bioc Package Browser https://code.bioconductor.org/browse/ExploreModelMatrix/
Package Short Url https://bioconductor.org/packages/ExploreModelMatrix/
Package Downloads Report Download Stats