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GSCA

This is the development version of GSCA; for the stable release version, see GSCA.

GSCA: Gene Set Context Analysis

Bioconductor version: Development (3.18)

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("GSCA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSCA")
GSCA PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, GeneExpression, Software, Visualization
Version 2.31.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL(>=2)
Depends shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0)
Imports graphics
Linking To
Suggests Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSCA_2.31.0.tar.gz
Windows Binary GSCA_2.31.0.zip
macOS Binary (x86_64) GSCA_2.31.0.tgz
macOS Binary (arm64) GSCA_2.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSCA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSCA
Bioc Package Browser https://code.bioconductor.org/browse/GSCA/
Package Short Url https://bioconductor.org/packages/GSCA/
Package Downloads Report Download Stats