GeneBreak

This is the development version of GeneBreak; for the stable release version, see GeneBreak.

Gene Break Detection

Bioconductor version: Development (3.18)

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GeneBreak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

GeneBreak	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version	1.31.0
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	GPL-2
Depends	R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports	graphics, methods
Linking To
Suggests
System Requirements
Enhances
URL	https://github.com/stefvanlieshout/GeneBreak

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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneBreak_1.31.0.tar.gz
Windows Binary	GeneBreak_1.31.0.zip
macOS Binary (x86_64)	GeneBreak_1.31.0.tgz
macOS Binary (arm64)	GeneBreak_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneBreak
Bioc Package Browser	https://code.bioconductor.org/browse/GeneBreak/
Package Short Url	https://bioconductor.org/packages/GeneBreak/
Package Downloads Report	Download Stats