This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

GeneStructureTools

This is the development version of GeneStructureTools; for the stable release version, see GeneStructureTools.

Tools for spliced gene structure manipulation and analysis

Bioconductor version: Development (3.18)

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, enter citation("GeneStructureTools")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GeneStructureTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneStructureTools")
Introduction to GeneStructureTools HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License BSD_3_clause + file LICENSE
Depends
Imports Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneStructureTools_1.21.0.tar.gz
Windows Binary GeneStructureTools_1.21.0.zip (64-bit only)
macOS Binary (x86_64) GeneStructureTools_1.21.0.tgz
macOS Binary (arm64) GeneStructureTools_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneStructureTools
Bioc Package Browser https://code.bioconductor.org/browse/GeneStructureTools/
Package Short Url https://bioconductor.org/packages/GeneStructureTools/
Package Downloads Report Download Stats