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IWTomics

This is the development version of IWTomics; for the stable release version, see IWTomics.

Interval-Wise Testing for Omics Data

Bioconductor version: Development (3.18)

Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.

Author: Marzia A Cremona, Alessia Pini, Francesca Chiaromonte, Simone Vantini

Maintainer: Marzia A Cremona <mac78 at psu.edu>

Citation (from within R, enter citation("IWTomics")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IWTomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IWTomics")
Introduction to IWTomics PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, GenomeAnnotation, MultipleComparison, Software, StatisticalMethod
Version 1.25.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL (>=2)
Depends R (>= 3.5.0), GenomicRanges
Imports parallel, gtable, grid, graphics, methods, IRanges, KernSmooth, fda, S4Vectors, grDevices, stats, utils, tools
Linking To
Suggests knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IWTomics_1.25.0.tar.gz
Windows Binary IWTomics_1.25.0.zip
macOS Binary (x86_64) IWTomics_1.25.0.tgz
macOS Binary (arm64) IWTomics_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IWTomics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IWTomics
Bioc Package Browser https://code.bioconductor.org/browse/IWTomics/
Package Short Url https://bioconductor.org/packages/IWTomics/
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