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MODA

This is the development version of MODA; for the stable release version, see MODA.

MODA: MOdule Differential Analysis for weighted gene co-expression network

Bioconductor version: Development (3.18)

MODA can be used to estimate and construct condition-specific gene co-expression networks, and identify differentially expressed subnetworks as conserved or condition specific modules which are potentially associated with relevant biological processes.

Author: Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu and Shan He

Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>

Citation (from within R, enter citation("MODA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MODA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MODA")
Vignette Title HTML
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Network, Software
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL (>= 2)
Depends R (>= 3.3)
Imports grDevices, graphics, stats, utils, WGCNA, dynamicTreeCut, igraph, cluster, AMOUNTAIN, RColorBrewer
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
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Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MODA_1.27.0.tar.gz
Windows Binary MODA_1.27.0.zip
macOS Binary (x86_64) MODA_1.27.0.tgz
macOS Binary (arm64) MODA_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MODA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MODA
Bioc Package Browser https://code.bioconductor.org/browse/MODA/
Package Short Url https://bioconductor.org/packages/MODA/
Package Downloads Report Download Stats