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MSstatsConvert

This is the development version of MSstatsConvert; for the stable release version, see MSstatsConvert.

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: Development (3.18)

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsConvert")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MSstatsConvert")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsConvert")
Working with MSstatsConvert HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.11.5
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports data.table, log4r, methods, checkmate, utils, stringi
Linking To
Suggests tinytest, covr, knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me MSstats, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsConvert_1.11.5.tar.gz
Windows Binary MSstatsConvert_1.11.5.zip
macOS Binary (x86_64) MSstatsConvert_1.11.5.tgz
macOS Binary (arm64) MSstatsConvert_1.11.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsConvert
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsConvert
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsConvert/
Package Short Url https://bioconductor.org/packages/MSstatsConvert/
Package Downloads Report Download Stats