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MSstatsQC

This is the development version of MSstatsQC; for the stable release version, see MSstatsQC.

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: Development (3.18)

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

Maintainer: Eralp Dogu <eralp.dogu at gmail.com>

Citation (from within R, enter citation("MSstatsQC")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MSstatsQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsQC")
MSstatsQC HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews MassSpectrometry, Proteomics, QualityControl, Software
Version 2.19.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic License 2.0
Depends R (>= 3.5.0)
Imports dplyr, plotly, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics
Linking To
Suggests knitr, rmarkdown, testthat, RforProteomics
System Requirements
Enhances
URL http://msstats.org/msstatsqc
Bug Reports https://groups.google.com/forum/#!forum/msstatsqc
See More
Depends On Me
Imports Me MSstatsQCgui
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsQC_2.19.0.tar.gz
Windows Binary MSstatsQC_2.19.0.zip
macOS Binary (x86_64) MSstatsQC_2.19.0.tgz
macOS Binary (arm64) MSstatsQC_2.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsQC
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsQC/
Package Short Url https://bioconductor.org/packages/MSstatsQC/
Package Downloads Report Download Stats