This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

MultiBaC

This is the development version of MultiBaC; for the stable release version, see MultiBaC.

Multiomic Batch effect Correction

Bioconductor version: Development (3.18)

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")

Maintainer: The package maintainer <manuelugidos at gmail.com>

Citation (from within R, enter citation("MultiBaC")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MultiBaC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiBaC")
MultiBaC HTML R Script
Reference Manual PDF

Details

biocViews BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends
Imports Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods
Linking To
Suggests knitr, rmarkdown, BiocStyle, devtools
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MultiBaC_1.11.0.tar.gz
Windows Binary MultiBaC_1.11.0.zip
macOS Binary (x86_64) MultiBaC_1.11.0.tgz
macOS Binary (arm64) MultiBaC_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MultiBaC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MultiBaC
Bioc Package Browser https://code.bioconductor.org/browse/MultiBaC/
Package Short Url https://bioconductor.org/packages/MultiBaC/
Package Downloads Report Download Stats