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OCplus

This is the development version of OCplus; for the stable release version, see OCplus.

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: Development (3.18)

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Citation (from within R, enter citation("OCplus")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OCplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OCplus")
OCplus Introduction PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.75.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License LGPL
Depends R (>= 2.1.0)
Imports multtest(>= 1.7.3), graphics, grDevices, stats, interp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OCplus_1.75.0.tar.gz
Windows Binary OCplus_1.75.0.zip
macOS Binary (x86_64) OCplus_1.75.0.tgz
macOS Binary (arm64) OCplus_1.75.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OCplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OCplus
Bioc Package Browser https://code.bioconductor.org/browse/OCplus/
Package Short Url https://bioconductor.org/packages/OCplus/
Package Downloads Report Download Stats