This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Omixer

This is the development version of Omixer; for the stable release version, see Omixer.

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: Development (3.18)

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Citation (from within R, enter citation("Omixer")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")
my-vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr
Linking To
Suggests knitr, rmarkdown, BiocStyle, magick, testthat
System Requirements
Enhances
URL
Bug Reports https://github.com/molepi/Omixer/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Omixer_1.11.0.tar.gz
Windows Binary Omixer_1.11.0.zip
macOS Binary (x86_64) Omixer_1.11.0.tgz
macOS Binary (arm64) Omixer_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Omixer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Omixer
Bioc Package Browser https://code.bioconductor.org/browse/Omixer/
Package Short Url https://bioconductor.org/packages/Omixer/
Package Downloads Report Download Stats