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Omixer

This is the development version of Omixer; for the stable release version, see Omixer.

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: Development (3.18)

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Citation (from within R, enter citation("Omixer")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")
my-vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr
Linking To
Suggests knitr, rmarkdown, BiocStyle, magick, testthat
System Requirements
Enhances
URL
Bug Reports https://github.com/molepi/Omixer/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Omixer_1.11.0.tar.gz
Windows Binary Omixer_1.11.0.zip
macOS Binary (x86_64) Omixer_1.11.0.tgz
macOS Binary (arm64) Omixer_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Omixer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Omixer
Bioc Package Browser https://code.bioconductor.org/browse/Omixer/
Package Short Url https://bioconductor.org/packages/Omixer/
Package Downloads Report Download Stats