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RBioFormats

This is the development version of RBioFormats; for the stable release version, see RBioFormats.

R interface to Bio-Formats

Bioconductor version: Development (3.18)

An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

Author: Andrzej Oleś [aut, cre] , John Lee [ctb]

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("RBioFormats")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RBioFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RBioFormats")
RBioFormats: an R interface to the Bio-Formats library HTML R Script
Reference Manual PDF

Details

biocViews DataImport, Software
Version 1.1.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License GPL-3
Depends
Imports EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats
Linking To
Suggests BiocStyle, knitr, testthat, xml2
System Requirements Java (>= 1.7)
Enhances
URL https://github.com/aoles/RBioFormats
Bug Reports https://github.com/aoles/RBioFormats/issues
See More
Depends On Me
Imports Me SpatialOmicsOverlay
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RBioFormats_1.1.0.tar.gz
Windows Binary RBioFormats_1.1.0.zip (64-bit only)
macOS Binary (x86_64) RBioFormats_1.1.0.tgz
macOS Binary (arm64) RBioFormats_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RBioFormats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RBioFormats
Bioc Package Browser https://code.bioconductor.org/browse/RBioFormats/
Package Short Url https://bioconductor.org/packages/RBioFormats/
Package Downloads Report Download Stats