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RTNduals

This is the development version of RTNduals; for the stable release version, see RTNduals.

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: Development (3.18)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTNduals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTNduals")
RTNduals: analysis of co-regulation and inference of dual regulons. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version 1.25.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.6.3), RTN(>= 2.14.1), methods
Imports graphics, grDevices, stats, utils
Linking To
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me RTNsurvival
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTNduals_1.25.0.tar.gz
Windows Binary RTNduals_1.25.0.zip
macOS Binary (x86_64) RTNduals_1.25.0.tgz
macOS Binary (arm64) RTNduals_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTNduals
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTNduals
Bioc Package Browser https://code.bioconductor.org/browse/RTNduals/
Package Short Url https://bioconductor.org/packages/RTNduals/
Package Downloads Report Download Stats