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Rarr

This is the development version of Rarr; for the stable release version, see Rarr.

Read Zarr Files in R

Bioconductor version: Development (3.18)

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("Rarr")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rarr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rarr")
Working with Zarr arrays in R HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Software
Version 1.1.1
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends
Imports jsonlite, httr, stringr, R.utils, utils, paws.storage, methods
Linking To
Suggests BiocStyle, covr, knitr, tinytest
System Requirements GNU make
Enhances
URL https://github.com/grimbough/Rarr
Bug Reports https://github.com/grimbough/Rarr/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rarr_1.1.1.tar.gz
Windows Binary Rarr_1.1.1.zip
macOS Binary (x86_64) Rarr_1.1.1.tgz
macOS Binary (arm64) Rarr_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rarr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rarr
Bioc Package Browser https://code.bioconductor.org/browse/Rarr/
Package Short Url https://bioconductor.org/packages/Rarr/
Package Downloads Report Download Stats