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Rcwl

This is the development version of Rcwl; for the stable release version, see Rcwl.

An R interface to the Common Workflow Language

Bioconductor version: Development (3.18)

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("Rcwl")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ImmunoOncology, Software, WorkflowStep
Version 1.17.1
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-2 | file LICENSE
Depends R (>= 3.6), yaml, methods, S4Vectors
Imports utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk
Linking To
Suggests testthat, knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL
See More
Depends On Me RcwlPipelines
Imports Me ReUseData
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64) Rcwl_1.17.1.tgz
macOS Binary (arm64) Rcwl_1.17.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rcwl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rcwl
Bioc Package Browser https://code.bioconductor.org/browse/Rcwl/
Package Short Url https://bioconductor.org/packages/Rcwl/
Package Downloads Report Download Stats