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SNAGEE

This is the development version of SNAGEE; for the stable release version, see SNAGEE.

Signal-to-Noise applied to Gene Expression Experiments

Bioconductor version: Development (3.18)

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Author: David Venet <davenet at ulb.ac.be>

Maintainer: David Venet <davenet at ulb.ac.be>

Citation (from within R, enter citation("SNAGEE")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SNAGEE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNAGEE")
SNAGEE Vignette PDF R Script
Reference Manual PDF

Details

biocViews Microarray, OneChannel, QualityControl, Software, TwoChannel
Version 1.41.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), SNAGEEdata
Imports
Linking To
Suggests ALL, hgu95av2.db
System Requirements
Enhances parallel
URL http://bioconductor.org/
See More
Depends On Me
Imports Me
Suggests Me SNAGEEdata
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNAGEE_1.41.0.tar.gz
Windows Binary SNAGEE_1.41.0.zip
macOS Binary (x86_64) SNAGEE_1.41.0.tgz
macOS Binary (arm64) SNAGEE_1.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SNAGEE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SNAGEE
Bioc Package Browser https://code.bioconductor.org/browse/SNAGEE/
Package Short Url https://bioconductor.org/packages/SNAGEE/
Package Downloads Report Download Stats