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StarBioTrek

This is the development version of StarBioTrek; for the stable release version, see StarBioTrek.

StarBioTrek

Bioconductor version: Development (3.18)

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("StarBioTrek")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneRegulation, KEGG, Network, Pathways, Software
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL (>= 3)
Depends R (>= 3.3)
Imports SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
System Requirements
Enhances
URL https://github.com/claudiacava/StarBioTrek
Bug Reports https://github.com/claudiacava/StarBioTrek/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package StarBioTrek_1.27.0.tar.gz
Windows Binary StarBioTrek_1.27.0.zip
macOS Binary (x86_64) StarBioTrek_1.27.0.tgz
macOS Binary (arm64) StarBioTrek_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/StarBioTrek
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/StarBioTrek
Bioc Package Browser https://code.bioconductor.org/browse/StarBioTrek/
Package Short Url https://bioconductor.org/packages/StarBioTrek/
Package Downloads Report Download Stats