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TileDBArray

This is the development version of TileDBArray; for the stable release version, see TileDBArray.

Using TileDB as a DelayedArray Backend

Bioconductor version: Development (3.18)

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("TileDBArray")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TileDBArray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TileDBArray")
User guide HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.11.1
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License MIT + file LICENSE
Depends DelayedArray(>= 0.27.2)
Imports methods, Rcpp, tiledb, S4Vectors
Linking To Rcpp
Suggests knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
System Requirements
Enhances
URL https://github.com/LTLA/TileDBArray
Bug Reports https://github.com/LTLA/TileDBArray
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TileDBArray_1.11.1.tar.gz
Windows Binary TileDBArray_1.11.1.zip
macOS Binary (x86_64) TileDBArray_1.11.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TileDBArray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TileDBArray
Bioc Package Browser https://code.bioconductor.org/browse/TileDBArray/
Package Short Url https://bioconductor.org/packages/TileDBArray/
Package Downloads Report Download Stats