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Wrench

This is the development version of Wrench; for the stable release version, see Wrench.

Wrench normalization for sparse count data

Bioconductor version: Development (3.18)

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("Wrench")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Wrench")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")
Wrench HTML R Script
Reference Manual PDF

Details

biocViews Normalization, Sequencing, Software
Version 1.19.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports limma, matrixStats, locfit, stats, graphics
Linking To
Suggests knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
System Requirements
Enhances
URL https://github.com/HCBravoLab/Wrench
Bug Reports https://github.com/HCBravoLab/Wrench/issues
See More
Depends On Me
Imports Me metagenomeSeq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Wrench_1.19.0.tar.gz
Windows Binary Wrench_1.19.0.zip
macOS Binary (x86_64) Wrench_1.19.0.tgz
macOS Binary (arm64) Wrench_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Wrench
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Wrench
Bioc Package Browser https://code.bioconductor.org/browse/Wrench/
Package Short Url https://bioconductor.org/packages/Wrench/
Package Downloads Report Download Stats