apComplex

This is the development version of apComplex; for the stable release version, see apComplex.

Estimate protein complex membership using AP-MS protein data

Bioconductor version: Development (3.18)

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Citation (from within R, enter citation("apComplex")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")

apComplex	PDF	R Script
Reference Manual	PDF

Details

biocViews	GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version	2.67.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18 years)
License	LGPL
Depends	R (>= 2.10), graph, RBGL
Imports	Rgraphviz, stats, org.Sc.sgd.db
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	apComplex_2.67.0.tar.gz
Windows Binary	apComplex_2.67.0.zip
macOS Binary (x86_64)	apComplex_2.67.0.tgz
macOS Binary (arm64)	apComplex_2.67.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/apComplex
Bioc Package Browser	https://code.bioconductor.org/browse/apComplex/
Package Short Url	https://bioconductor.org/packages/apComplex/
Package Downloads Report	Download Stats