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aroma.light

This is the development version of aroma.light; for the stable release version, see aroma.light.

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: Development (3.18)

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

Citation (from within R, enter citation("aroma.light")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("aroma.light")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization
Version 3.31.1
In Bioconductor since BioC 1.9 (R-2.4) (17 years)
License GPL (>= 2)
Depends R (>= 2.15.2)
Imports stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0)
Linking To
Suggests princurve (>= 2.1.4)
System Requirements
Enhances
URL https://github.com/HenrikBengtsson/aroma.light https://www.aroma-project.org
Bug Reports https://github.com/HenrikBengtsson/aroma.light/issues
See More
Depends On Me
Imports Me EDASeq, scone
Suggests Me TIN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aroma.light_3.31.1.tar.gz
Windows Binary aroma.light_3.31.1.zip
macOS Binary (x86_64) aroma.light_3.31.1.tgz
macOS Binary (arm64) aroma.light_3.31.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/aroma.light
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aroma.light
Bioc Package Browser https://code.bioconductor.org/browse/aroma.light/
Package Short Url https://bioconductor.org/packages/aroma.light/
Package Downloads Report Download Stats