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biodbNci

This is the development version of biodbNci; for the stable release version, see biodbNci.

biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database

Bioconductor version: Development (3.18)

The biodbNci library is an extension of the biodb framework package. It provides access to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database. It allows to retrieve entries by their accession number, and run specific web services.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbNci")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biodbNci")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNci")
Introduction to the biodbNci package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.5.0
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.1), R6, Rcpp, chk
Linking To Rcpp, testthat
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbNci_1.5.0.tar.gz
Windows Binary biodbNci_1.5.0.zip
macOS Binary (x86_64) biodbNci_1.5.0.tgz
macOS Binary (arm64) biodbNci_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbNci
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbNci
Bioc Package Browser https://code.bioconductor.org/browse/biodbNci/
Package Short Url https://bioconductor.org/packages/biodbNci/
Package Downloads Report Download Stats