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cellbaseR

This is the development version of cellbaseR; for the stable release version, see cellbaseR.

Querying annotation data from the high performance Cellbase web

Bioconductor version: Development (3.18)

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Author: Mohammed OE Abdallah

Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>

Citation (from within R, enter citation("cellbaseR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cellbaseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellbaseR")
Simplifying Genomic Annotations in R HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Software, VariantAnnotation
Version 1.25.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License Apache License (== 2.0)
Depends R (>= 3.4)
Imports methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
Linking To
Suggests BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
System Requirements
Enhances
URL https://github.com/melsiddieg/cellbaseR
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellbaseR_1.25.0.tar.gz
Windows Binary cellbaseR_1.25.0.zip
macOS Binary (x86_64) cellbaseR_1.25.0.tgz
macOS Binary (arm64) cellbaseR_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellbaseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellbaseR
Bioc Package Browser https://code.bioconductor.org/browse/cellbaseR/
Package Short Url https://bioconductor.org/packages/cellbaseR/
Package Downloads Report Download Stats