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chopsticks

This is the development version of chopsticks; for the stable release version, see chopsticks.

The 'snp.matrix' and 'X.snp.matrix' Classes

Bioconductor version: Development (3.18)

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Citation (from within R, enter citation("chopsticks")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chopsticks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")
snpMatrix PDF R Script
Reference Manual PDF

Details

biocViews GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version 1.67.0
In Bioconductor since BioC 2.8 (R-2.13) (12.5 years)
License GPL-3
Depends
Imports graphics, stats, utils, methods, survival
Linking To
Suggests hexbin
System Requirements
Enhances
URL http://outmodedbonsai.sourceforge.net/
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chopsticks_1.67.0.tar.gz
Windows Binary chopsticks_1.67.0.zip
macOS Binary (x86_64) chopsticks_1.67.0.tgz
macOS Binary (arm64) chopsticks_1.67.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chopsticks
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chopsticks
Bioc Package Browser https://code.bioconductor.org/browse/chopsticks/
Package Short Url https://bioconductor.org/packages/chopsticks/
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