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consensus

This is the development version of consensus; for the stable release version, see consensus.

Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

Bioconductor version: Development (3.18)

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

Author: Tim Peters

Maintainer: Tim Peters <t.peters at garvan.org.au>

Citation (from within R, enter citation("consensus")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("consensus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("consensus")
Fitting and visualising row-linear models with \texttt{consensus} PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, GeneExpression, Microarray, QualityControl, RNASeq, Regression, Software
Version 1.19.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License BSD_3_clause + file LICENSE
Depends R (>= 3.5), RColorBrewer
Imports matrixStats, gplots, grDevices, methods, graphics, stats, utils
Linking To
Suggests knitr, RUnit, rmarkdown, BiocGenerics
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package consensus_1.19.0.tar.gz
Windows Binary consensus_1.19.0.zip
macOS Binary (x86_64) consensus_1.19.0.tgz
macOS Binary (arm64) consensus_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/consensus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/consensus
Bioc Package Browser https://code.bioconductor.org/browse/consensus/
Package Short Url https://bioconductor.org/packages/consensus/
Package Downloads Report Download Stats