dStruct

This is the development version of dStruct; for the stable release version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data

Bioconductor version: Development (3.18)

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al, Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] , Sharon Aviran [aut]

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Citation (from within R, enter citation("dStruct")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")

Differential RNA structurome analysis using `dStruct`	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Sequencing, Software, StatisticalMethod, StructuralPrediction
Version	1.7.1
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	GPL (>= 2)
Depends	R (>= 4.1)
Imports	zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils
Linking To
Suggests	BiocStyle, knitr, rmarkdown, tidyverse, testthat (>= 3.0.0)
System Requirements
Enhances
URL	https://github.com/dataMaster-Kris/dStruct
Bug Reports	https://github.com/dataMaster-Kris/dStruct/issues

Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dStruct_1.7.1.tar.gz
Windows Binary	dStruct_1.7.1.zip
macOS Binary (x86_64)	dStruct_1.7.1.tgz
macOS Binary (arm64)	dStruct_1.7.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dStruct
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dStruct
Bioc Package Browser	https://code.bioconductor.org/browse/dStruct/
Package Short Url	https://bioconductor.org/packages/dStruct/
Package Downloads Report	Download Stats