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dupRadar

This is the development version of dupRadar; for the stable release version, see dupRadar.

Assessment of duplication rates in RNA-Seq datasets

Bioconductor version: Development (3.18)

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Citation (from within R, enter citation("dupRadar")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dupRadar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")
Using dupRadar HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology
Version 1.31.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL-3
Depends R (>= 3.2.0)
Imports Rsubread(>= 1.14.1), KernSmooth
Linking To
Suggests BiocStyle, knitr, rmarkdown, AnnotationHub
System Requirements
Enhances
URL https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html
See More
Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dupRadar_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64) dupRadar_1.31.0.tgz
macOS Binary (arm64) dupRadar_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dupRadar
Bioc Package Browser https://code.bioconductor.org/browse/dupRadar/
Package Short Url https://bioconductor.org/packages/dupRadar/
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