This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

fdrame

This is the development version of fdrame; for the stable release version, see fdrame.

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: Development (3.18)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fdrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")
Annotation Overview PDF
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.73.0
In Bioconductor since BioC 1.7 (R-2.2) (18 years)
License GPL (>= 2)
Depends
Imports tcltk, graphics, grDevices, stats, utils
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fdrame_1.73.0.tar.gz
Windows Binary fdrame_1.73.0.zip
macOS Binary (x86_64) fdrame_1.73.0.tgz
macOS Binary (arm64) fdrame_1.73.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fdrame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fdrame
Bioc Package Browser https://code.bioconductor.org/browse/fdrame/
Package Short Url https://bioconductor.org/packages/fdrame/
Package Downloads Report Download Stats