This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

flagme

This is the development version of flagme; for the stable release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: Development (3.18)

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")
\texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data PDF R Script
Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, MassSpectrometry, Software
Version 1.57.0
In Bioconductor since BioC 2.4 (R-2.9) (14.5 years)
License LGPL (>= 2)
Depends gcspikelite, xcms, CAMERA
Imports gplots, graphics, MASS, methods, SparseM, stats, utils
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flagme_1.57.0.tar.gz
Windows Binary flagme_1.57.0.zip
macOS Binary (x86_64) flagme_1.57.0.tgz
macOS Binary (arm64) flagme_1.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flagme
Bioc Package Browser https://code.bioconductor.org/browse/flagme/
Package Short Url https://bioconductor.org/packages/flagme/
Package Downloads Report Download Stats