flowMap
This is the development version of flowMap; for the stable release version, see flowMap.
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
Bioconductor version: Development (3.18)
flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.
Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>
citation("flowMap")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowMap")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | FlowCytometry, ImmunoOncology, MultipleComparison, Software |
| Version | 1.39.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14) |
| Imports | |
| Linking To | |
| Suggests | BiocStyle, knitr |
| System Requirements | |
| Enhances | |
| URL |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | flowMap_1.39.0.zip |
| macOS Binary (x86_64) | flowMap_1.39.0.tgz |
| macOS Binary (arm64) | flowMap_1.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowMap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowMap |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowMap/ |
| Package Short Url | https://bioconductor.org/packages/flowMap/ |
| Package Downloads Report | Download Stats |