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ggtreeDendro

This is the development version of ggtreeDendro; for the stable release version, see ggtreeDendro.

Drawing 'dendrogram' using 'ggtree'

Bioconductor version: Development (3.18)

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [ctb] , Chuanjie Zhang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtreeDendro")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggtreeDendro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeDendro")
Visualizing Dendrogram using ggtree HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization
Version 1.3.1
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License Artistic-2.0
Depends ggtree(>= 3.5.3)
Imports ggplot2, stats, tidytree, utils
Linking To
Suggests aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggtreeDendro_1.3.1.tar.gz
Windows Binary ggtreeDendro_1.3.1.zip (64-bit only)
macOS Binary (x86_64) ggtreeDendro_1.3.1.tgz
macOS Binary (arm64) ggtreeDendro_1.3.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggtreeDendro
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggtreeDendro
Bioc Package Browser https://code.bioconductor.org/browse/ggtreeDendro/
Package Short Url https://bioconductor.org/packages/ggtreeDendro/
Package Downloads Report Download Stats