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graper

This is the development version of graper; for the stable release version, see graper.

Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes

Bioconductor version: Development (3.18)

This package enables regression and classification on high-dimensional data with different relative strengths of penalization for different feature groups, such as different assays or omic types. The optimal relative strengths are chosen adaptively. Optimisation is performed using a variational Bayes approach.

Author: Britta Velten [aut, cre], Wolfgang Huber [aut]

Maintainer: Britta Velten <britta.velten at gmail.com>

Citation (from within R, enter citation("graper")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("graper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graper")
example_linear HTML R Script
example_logistic HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Bayesian, Classification, Regression, Software
Version 1.17.1
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL (>= 2)
Depends R (>= 3.6)
Imports Matrix, Rcpp, stats, ggplot2, methods, cowplot, matrixStats
Linking To Rcpp, RcppArmadillo, BH
Suggests knitr, rmarkdown, BiocStyle, testthat
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graper_1.17.1.tar.gz
Windows Binary graper_1.17.1.zip
macOS Binary (x86_64) graper_1.17.1.tgz
macOS Binary (arm64) graper_1.17.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/graper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/graper
Bioc Package Browser https://code.bioconductor.org/browse/graper/
Package Short Url https://bioconductor.org/packages/graper/
Package Downloads Report Download Stats