hypeR

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of hypeR; for the stable release version, see hypeR.

An R Package For Geneset Enrichment Workflows

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual	PDF

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	1.17.1
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6.0)
Imports	ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny
Linking To
Suggests	tidyverse, devtools, testthat, knitr
System Requirements
Enhances
URL	https://github.com/montilab/hypeR
Bug Reports	https://github.com/montilab/hypeR/issues

See More

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hypeR
Package Short Url	https://bioconductor.org/packages/hypeR/
Package Downloads Report	Download Stats