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iBBiG

This is the development version of iBBiG; for the stable release version, see iBBiG.

Iterative Binary Biclustering of Genesets

Bioconductor version: Development (3.18)

iBBiG is a bi-clustering algorithm which is optimizes for binary data analysis. We apply it to meta-gene set analysis of large numbers of gene expression datasets. The iterative algorithm extracts groups of phenotypes from multiple studies that are associated with similar gene sets. iBBiG does not require prior knowledge of the number or scale of clusters and allows discovery of clusters with diverse sizes

Author: Daniel Gusenleitner, Aedin Culhane

Maintainer: Aedin Culhane <aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("iBBiG")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iBBiG")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iBBiG")
iBBiG User Manual PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Clustering, GeneSetEnrichment, Software
Version 1.45.0
In Bioconductor since BioC 2.10 (R-2.15) (11.5 years)
License Artistic-2.0
Depends biclust
Imports stats4, xtable, ade4
Linking To
Suggests methods
System Requirements
Enhances
URL http://bcb.dfci.harvard.edu/~aedin/publications/
See More
Depends On Me
Imports Me miRSM
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iBBiG_1.45.0.tar.gz
Windows Binary iBBiG_1.45.0.zip
macOS Binary (x86_64) iBBiG_1.45.0.tgz
macOS Binary (arm64) iBBiG_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iBBiG
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iBBiG
Bioc Package Browser https://code.bioconductor.org/browse/iBBiG/
Package Short Url https://bioconductor.org/packages/iBBiG/
Package Downloads Report Download Stats